PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9239_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 255aa    MW: 29018.4 Da    PI: 6.3486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9239_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-111802201055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR++iN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  RrC9239_p1 180 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 220
                 9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14172234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13175230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11179224No hitNo description
PfamPF000101.9E-8180220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DEMLGLASLY NDHLHHHQNN ALPSDHHAFL  60
NTDMFPFSAM TGGNLPTILD DSWEQGQLQD TATLKRKLLN VENHNTYSNC DVTRQELVKA  120
KKKQRVSQES NTVDESNTNW RDGQSQSNSS DDEKASVTSV KGKTRATKGT ATDPQSLYAR  180
KRREKINERL KTLQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDE LWMYAPLAYN  240
GLDMGFHHNL LSRLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854360.0AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415733.11e-171hypothetical protein EUTSA_v10009862mg
SwissprotQ8LEG11e-154BH054_ARATH; Transcription factor bHLH54
TrEMBLV4MQV21e-171V4MQV2_EUTSA; Uncharacterized protein
STRINGBra010921.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-145root hair defective 6-like 4